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TVB-2149
Upgrade to labeled ndarrayTVB-2147
Build static PyOpenCL + PortableCL
Build PortableCL on WindowsTVB-2126
Inconsistent number of samples for RK4
Sim run method should produce TS objects
Review library logging
Review init + config pattern in simulator
Make package of models module
Incorrect analytic fwd mat for combined cortical & subcortical
Prototype OpenCL model implementation
Look at multirate methods for integration
Use sparse history & connectivity representation
Reorder state dimensions for minimum strides over node state
Verify behavior of scipy ode integrators
Generate random numbers in second process
Use randomstate module instead of NumPy for random numbersTVB-2073
simple text format for simulation specification
Review BNM paper for specific improvements
Evaluate use of single precision outside reductions
Evaluate numba package for use in simulator
Biscay 1996 LL SDE scheme
Laplace Beltrami local connectivity
Analytic SDE mean and covariance formulas
FC SC fit scaling linear SDE
Code path for no delays
Improved simulator algorithms
Check correctness of SigmoidalJansenRit.pre
Review use of voi in monitors
Look at variable-step methods for SDEs
Drop modes axis from monitors
Stimulus applied to coupling variables
Correctly interpolate in time when sampling in monitors
Rate models' state variables must be >= 0
Spherical transform based surface simulations
Review memory estimation in simulator
Correct dependencies between cortex, region mappings, projections
Newly created spatiotemporal stimulus not displayed on Simulator until re-login
Spherical EEG is not spherical
Develop source model for subcortical regions
Handle subcortical regions in monitors with analytic approximations
Implement other lead field algorithms
Refactor s/M/EEG monitors
Provide Jacobian for a given simulator object
Centralize external soft-dependencies in simulator
Fix coupling functions
Difference and Kuramoto couplings may be broken
Generalize History implementation in SimulatorTVB-1707
Simulator Core Review
Add automated scripts for benchmarking the simulator in COMMAND_PROFILE
Numerical accuracy evaluation and validation
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