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TVB-2741
number of step of the simulationTVB-2733
Review Simulator Page Flow
Epileptor 3 Codim + Larter Breakspear models are failing after launch
Finalize Simulator Page
Fix PSE Simulation Launch to work with GUID ranges
When running simulations, sampling period should not be more than the simulation lengthTVB-2149
Upgrade to labeled ndarrayTVB-2147
Build static PyOpenCL + PortableCL
Build PortableCL on Windows
Inconsistent number of samples for RK4
Sim run method should produce TS objects
Review library logging
Review init + config pattern in simulator
Make package of models module
Incorrect analytic fwd mat for combined cortical & subcortical
Prototype OpenCL model implementation
Look at multirate methods for integration
Use sparse history & connectivity representation
Reorder state dimensions for minimum strides over node state
Verify behavior of scipy ode integrators
Generate random numbers in second process
Use randomstate module instead of NumPy for random numbersTVB-2073
simple text format for simulation specification
Review BNM paper for specific improvements
Evaluate use of single precision outside reductions
Evaluate numba package for use in simulator
Biscay 1996 LL SDE scheme
Laplace Beltrami local connectivity
Analytic SDE mean and covariance formulas
FC SC fit scaling linear SDE
Code path for no delays
Improved simulator algorithms
Check correctness of SigmoidalJansenRit.pre
Review use of voi in monitors
Look at variable-step methods for SDEs
Drop modes axis from monitors
Stimulus applied to coupling variables
Correctly interpolate in time when sampling in monitors
Rate models' state variables must be >= 0
Spherical transform based surface simulations
Review memory estimation in simulator
Correct dependencies between cortex, region mappings, projections
Newly created spatiotemporal stimulus not displayed on Simulator until re-login
Spherical EEG is not spherical
Develop source model for subcortical regions
Handle subcortical regions in monitors with analytic approximations
Implement other lead field algorithms
Refactor s/M/EEG monitors
Provide Jacobian for a given simulator object
Centralize external soft-dependencies in simulator
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TVB-Simulator","validSearcher":true,"isShown":true},"project":{"name":"Project","viewHtml":" <div class=\"searcherValue\">\n \n <label class=\"fieldLabel\" for=\"fieldpid\">Project:</label><span id=\"fieldpid\" class=\"fieldValue\">\n \n <a href=\"/browse/TVB\" title=\"Browse The Virtual Brain project\">The Virtual Brain</a> </span></div>\n","editHtml":"\n <div class=\"field-group aui-field-project\" >\n <label for=\"searcher-pid\">Project</label>\n \n\n <select class=\"select js-default-checkboxmultiselect\" data-placeholder-text=\"Find Projects...\" id=\"searcher-pid\" multiple=\"multiple\" name=\"pid\" size=\"3\">\n <optgroup label=\"All Projects\">\n \n <option data-icon=\"/secure/projectavatar?pid=10814&size=small\"\n title=\"HBP-WP1\"\n value=\"10814\">\n HBP-WP1 (WP1)\n </option>\n \n <option data-icon=\"/secure/projectavatar?pid=10000&size=small\"\n selected=\"selected\" title=\"The Virtual Brain\"\n value=\"10000\">\n The Virtual Brain (TVB)\n </option>\n </optgroup>\n </select>\n </div>\n \n","jql":"project = TVB","validSearcher":true,"isShown":true},"assignee":{"name":"Assignee","editHtml":"\n \n <div class=\"field-group aui-field-userlist\" >\n <label for=\"searcher-assigneeSelect\">Assignee</label>\n <fieldset rel=\"assignee\" class=\"hidden user-group-searcher-params\">\n </fieldset>\n <select class=\"js-usergroup-checkboxmultiselect\" multiple=\"multiple\" id=\"assignee\" name=\"assignee\" data-placeholder-text=\"Enter username or group\">\n <optgroup>\n <option class=\"headerOption\" data-icon=\"https://req.thevirtualbrain.org/secure/useravatar?size=xsmall&avatarId=10083\" value=\"empty\" title=\"Unassigned\">Unassigned</option>\n </optgroup>\n <optgroup>\n </optgroup>\n </select>\n <input type=\"hidden\" name=\"check_prev_assignee\" value=\"true\">\n </div>\n \n","validSearcher":true,"isShown":true},"status":{"name":"Status","editHtml":"\n <div class=\"field-group aui-field-constants\" >\n <label for=\"searcher-status\">Status</label>\n \n <select class=\"select js-default-checkboxmultiselectstatuslozenge\" data-placeholder-text=\"Find Statuses...\" id=\"searcher-status\" multiple=\"multiple\" name=\"status\" size=\"4\" data-status-lozenge=\"true\">\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/open.png\" value=\"1\" title=\"Open\" data-simple-status=\"{"id":"1","name":"Open","description":"The issue is open and ready for the assignee to start work on it.","iconUrl":"/images/icons/statuses/open.png","statusCategory":{"id":2,"key":"new","colorName":"blue-gray"}}\">Open</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/inprogress.png\" value=\"3\" title=\"In Progress\" data-simple-status=\"{"id":"3","name":"In Progress","description":"This issue is being actively worked on at the moment by the assignee.","iconUrl":"/images/icons/statuses/inprogress.png","statusCategory":{"id":4,"key":"indeterminate","colorName":"yellow"}}\">In Progress</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/reopened.png\" value=\"4\" title=\"Reopened\" data-simple-status=\"{"id":"4","name":"Reopened","description":"This issue was once resolved, but the resolution was deemed incorrect. From here issues are either marked assigned or resolved.","iconUrl":"/images/icons/statuses/reopened.png","statusCategory":{"id":2,"key":"new","colorName":"blue-gray"}}\">Reopened</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/resolved.png\" value=\"5\" title=\"Resolved\" data-simple-status=\"{"id":"5","name":"Resolved","description":"A resolution has been taken, and it is awaiting verification by reporter. From here issues are either reopened, or are closed.","iconUrl":"/images/icons/statuses/resolved.png","statusCategory":{"id":3,"key":"done","colorName":"green"}}\">Resolved</option>\n <option class=\"imagebacked\" data-icon=\"/images/icons/statuses/closed.png\" value=\"6\" title=\"Closed\" data-simple-status=\"{"id":"6","name":"Closed","description":"The issue is considered finished, the resolution is correct. Issues which are closed can be reopened.","iconUrl":"/images/icons/statuses/closed.png","statusCategory":{"id":3,"key":"done","colorName":"green"}}\">Closed</option>\n </select>\n </div>\n \n","validSearcher":true,"isShown":true}}}
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