Weird log-entries when starting TVB from Deployment package.

When starting after a "clean", the log has some weired entries, when trying to start a Sim:

• something in mplh5 seem to be wrong (however we want to kick it out anyway, right?)
• we seem to have an unnecessary genshi-setting (or miss a lib here)
• the compiler-warning about Numpy is worrying a bit (but we do compile it soon anyway. Or do we already??)
• we use deprecated functions for managing memory-tasks

Following the relevant snipp from the log.

Unhandled exception in thread started by
Traceback (most recent call last):
File "C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip
\mplh5canvas\simple_server.py", line 318, in serve_forever
[], [], poll_interval)
File "socket.pyc", line 224, in meth

File "socket.pyc", line 170, in _dummy

socket.error: [Errno 9] Bad file descriptor
C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip\tvb\cor
e\adapters\abcadapter.py:175: DeprecationWarning: psutil.phymem_usage is depreca
ted
total_free_memory = psutil.phymem_usage().free + psutil.virtmem_usage().free
C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip\tvb\cor
e\adapters\abcadapter.py:175: DeprecationWarning: psutil.virtmem_usage is deprec
ated; use psutil.swap_memory() instead
total_free_memory = psutil.phymem_usage().free + psutil.virtmem_usage().free
Loading file. Created temporary file: c:\users\jmersm~1.cod\appdata\local\temp\c
ff_7459935\CNetwork\tvb_connectivity_matrix.gpickle
CherryPy Checker:
The config entry 'tools.buffet_genshi.on' may be invalid, because the 'buffet_ge
nshi' tool was not found.
section: [/]

Succeed.
C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip\numpy\l
ib\utils.py:1132: DeprecationWarning: The compiler package is deprecated and rem
oved in Python 3.x.
C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip\tvb\cor
e\adapters\abcadapter.py:175: DeprecationWarning: psutil.phymem_usage is depreca
ted
total_free_memory = psutil.phymem_usage().free + psutil.virtmem_usage().free
C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip\tvb\cor
e\adapters\abcadapter.py:175: DeprecationWarning: psutil.virtmem_usage is deprec
ated; use psutil.swap_memory() instead
total_free_memory = psutil.phymem_usage().free + psutil.virtmem_usage().free
C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip\tvb\cor
e\adapters\abcadapter.py:175: DeprecationWarning: psutil.phymem_usage is depreca
ted
total_free_memory = psutil.phymem_usage().free + psutil.virtmem_usage().free
C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip\tvb\cor
e\adapters\abcadapter.py:175: DeprecationWarning: psutil.virtmem_usage is deprec
ated; use psutil.swap_memory() instead
total_free_memory = psutil.phymem_usage().free + psutil.virtmem_usage().free
C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip\sqlalch
emy\orm\dependency.py:746: SAWarning: Object of type <CorticalSurface> not in se
ssion, add operation along 'RegionMappingData.__surface' won't proceed
uowcommit, "add")
C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip\sqlalch
emy\orm\dependency.py:746: SAWarning: Object of type <Connectivity> not in sessi
on, add operation along 'RegionMappingData.__connectivity' won't proceed
uowcommit, "add")
C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip\sqlalch
emy\orm\dependency.py:746: SAWarning: Object of type <CorticalSurface> not in se
ssion, add operation along 'LocalConnectivityData.__surface' won't proceed
uowcommit, "add")
Will not remove file c:\users\jmersm~1.cod\appdata\local\temp\cff_7459935\CNetwo
rk\tvb_connectivity_matrix.gpickle from file system
Remove .data attribute
Remove .tmpsrc attribute
C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip\tvb\cor
e\adapters\abcadapter.py:175: DeprecationWarning: psutil.phymem_usage is depreca
ted
total_free_memory = psutil.phymem_usage().free + psutil.virtmem_usage().free
C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip\tvb\cor
e\adapters\abcadapter.py:175: DeprecationWarning: psutil.virtmem_usage is deprec
ated; use psutil.swap_memory() instead
total_free_memory = psutil.phymem_usage().free + psutil.virtmem_usage().free
C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip\sqlalch
emy\orm\dependency.py:746: SAWarning: Object of type <CorticalSurface> not in se
ssion, add operation along 'ProjectionMatrixData.__sources' won't proceed
uowcommit, "add")
C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip\sqlalch
emy\orm\dependency.py:746: SAWarning: Object of type <SensorsEEG> not in session
, add operation along 'ProjectionMatrixData.__sensors' won't proceed
uowcommit, "add")
C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip\tvb\cor
e\adapters\abcadapter.py:175: DeprecationWarning: psutil.phymem_usage is depreca
ted
total_free_memory = psutil.phymem_usage().free + psutil.virtmem_usage().free
C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip\tvb\cor
e\adapters\abcadapter.py:175: DeprecationWarning: psutil.virtmem_usage is deprec
ated; use psutil.swap_memory() instead
total_free_memory = psutil.phymem_usage().free + psutil.virtmem_usage().free
C:\Users\jmersmann.CODEBOX\Desktop\TVB_Distribution\tvb_data\library.zip\sqlalch
emy\orm\dependency.py:746: SAWarning: Object of type <Connectivity> not in sessi
on, add operation along 'ProjectionMatrixData.__sources' won't proceed
uowcommit, "add")