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  1. The Virtual Brain
  2. TVB-683 Know Problems
  3. TVB-771

TVB web interface incompatibility with Linux Centos and ubuntu OS

    Details

    • Type: Sub-task
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: 0.9.6, 0.9.7, 0.9.8, 0.9.9, 0.9.10
    • Fix Version/s: 1.0
    • Component/s: Web Interface
    • Labels:
    • Environment:
      OS : Centos 6.3, 64-bit
      Web browser : Google Chrome Version 22.0.1229.79
      TVB: V 0.9.10, downloaded 4/10/2012

      Description

      TVB Developers,

      It appears the TVB software is incompatible with the aforementioned linux OS, as well as ubuntu 12.04. I was curious whether TVB has been tested on either ubuntu or CENTOS.

      I executed the commmand tvb_start.sh (after executing tvb_clean.sh) in a terminal and the web interface will not load. The latest version I know that supported Ubuntu Linux OS was 0.9.4-0.9.5. Thanks

      I received the following error text:

      [Errno 98] Address already in use
      Binding failed on port 8080.
      [Errno 98] Address already in use
      Binding failed on port 8081.
      Found the first free port: 8082.
      [alistair@atlantic TVB_Distribution]$ Could not find platform independent libraries <prefix>
      Could not find platform dependent libraries <exec_prefix>
      Consider setting $PYTHONHOME to <prefix>[:<exec_prefix>]
      Error WebSocketServer 9000([Errno 98] Address already in use)
      CherryPy Checker:
      The config entry 'tools.buffet_genshi.on' may be invalid, because the 'buffet_genshi' tool was not found.
      section: [/]

      Error showing url: Operation not supported

      I found the log files:

      cherrypy.log:

      2012-10-04 15:43:44,701 - INFO - cherrypy.error - [04/Oct/2012:15:43:44] ENGINE
      Bus STARTING
      2012-10-04 15:43:44,716 - INFO - cherrypy.error - [04/Oct/2012:15:43:44] ENGINE
      Started monitor thread '_TimeoutMonitor'.
      2012-10-04 15:43:44,819 - INFO - cherrypy.error - [04/Oct/2012:15:43:44] ENGINE
      Serving on 0.0.0.0:8082
      2012-10-04 15:43:44,819 - INFO - cherrypy.error - [04/Oct/2012:15:43:44] ENGINE
      Bus STARTED

      & web_application.log:

      2012-10-04 15:43:23,188 - INFO - tvb.interfaces.web.mplh5.mplh5server - MPLH5 back-end server started.
      2012-10-04 15:43:24,892 - INFO - tvb.interface.web.run - TVB application running using encoding: utf-8
      2012-10-04 15:43:30,333 - INFO - tvb.core.adapters.introspector - tvb.adapters.creators.local_connectivity_creator will be stored new in DB
      2012-10-04 15:43:30,462 - INFO - tvb.core.adapters.introspector - tvb.adapters.creators.stimulus_creator will be stored new in DB
      2012-10-04 15:43:30,603 - INFO - tvb.core.adapters.introspector - tvb.adapters.creators.stimulus_creator will be stored new in DB
      2012-10-04 15:43:33,970 - INFO - tvb.core.adapters.introspector - tvb.adapters.analyzers.cross_correlation_adapter will be stored new in DB
      2012-10-04 15:43:34,134 - INFO - tvb.core.adapters.introspector - tvb.adapters.analyzers.fourier_adapter will be stored new in DB
      2012-10-04 15:43:34,284 - INFO - tvb.core.adapters.introspector - tvb.adapters.analyzers.metrics_group_timeseries will be stored new in DB
      2012-10-04 15:43:34,471 - INFO - tvb.core.adapters.introspector - tvb.adapters.analyzers.node_coherence_adapter will be stored new in DB
      2012-10-04 15:43:34,653 - INFO - tvb.core.adapters.introspector - tvb.adapters.analyzers.node_covariance_adapter will be stored new in DB
      2012-10-04 15:43:34,820 - INFO - tvb.core.adapters.introspector - tvb.adapters.analyzers.pca_adapter will be stored new in DB
      2012-10-04 15:43:34,986 - INFO - tvb.core.adapters.introspector - tvb.adapters.analyzers.ica_adapter will be stored new in DB
      2012-10-04 15:43:35,185 - INFO - tvb.core.adapters.introspector - tvb.adapters.analyzers.variance_of_node_variance_adapter will be stored new in DB
      2012-10-04 15:43:35,366 - INFO - tvb.core.adapters.introspector - tvb.adapters.analyzers.variance_global_adapter will be stored new in DB
      2012-10-04 15:43:35,538 - INFO - tvb.core.adapters.introspector - tvb.adapters.analyzers.wavelet_adapter will be stored new in DB
      2012-10-04 15:43:35,855 - INFO - tvb.core.adapters.introspector - tvb.adapters.uploaders.cff_importer will be stored new in DB
      2012-10-04 15:43:36,032 - INFO - tvb.core.adapters.introspector - tvb.adapters.uploaders.gifti_surface_importer will be stored new in DB
      2012-10-04 15:43:36,198 - INFO - tvb.core.adapters.introspector - tvb.adapters.uploaders.gifti_timeseries_importer will be stored new in DB
      2012-10-04 15:43:36,360 - INFO - tvb.core.adapters.introspector - tvb.adapters.uploaders.nifti_importer will be stored new in DB
      2012-10-04 15:43:36,535 - INFO - tvb.core.adapters.introspector - tvb.adapters.uploaders.projection_matrix_importer will be stored new in DB
      2012-10-04 15:43:36,723 - INFO - tvb.core.adapters.introspector - tvb.adapters.uploaders.projection_matrix_importer will be stored new in DB
      2012-10-04 15:43:36,889 - INFO - tvb.core.adapters.introspector - tvb.adapters.uploaders.region_mapping_importer will be stored new in DB
      2012-10-04 15:43:37,056 - INFO - tvb.core.adapters.introspector - tvb.adapters.uploaders.sensors_importer will be stored new in DB
      2012-10-04 15:43:37,222 - INFO - tvb.core.adapters.introspector - tvb.adapters.uploaders.tvb_importer will be stored new in DB
      2012-10-04 15:43:37,414 - INFO - tvb.core.adapters.introspector - tvb.adapters.uploaders.zip_connectivity_importer will be stored new in DB
      2012-10-04 15:43:37,572 - INFO - tvb.core.adapters.introspector - tvb.adapters.uploaders.zip_surface_importer will be stored new in DB
      2012-10-04 15:43:38,028 - INFO - tvb.core.adapters.introspector - tvb.adapters.simulator.simulatorAdapter will be stored new in DB
      2012-10-04 15:43:38,347 - INFO - tvb.core.adapters.introspector - tvb.adapters.visualizers.brain will be stored new in DB
      2012-10-04 15:43:38,530 - INFO - tvb.core.adapters.introspector - tvb.adapters.visualizers.brain will be stored new in DB
      2012-10-04 15:43:38,691 - INFO - tvb.core.adapters.introspector - tvb.adapters.visualizers.eegMonitor will be stored new in DB
      2012-10-04 15:43:38,862 - INFO - tvb.core.adapters.introspector - tvb.adapters.visualizers.connectivity will be stored new in DB
      2012-10-04 15:43:39,016 - INFO - tvb.core.adapters.introspector - tvb.adapters.visualizers.histogram will be stored new in DB
      2012-10-04 15:43:39,174 - INFO - tvb.core.adapters.introspector - tvb.adapters.visualizers.eegMonitor will be updated
      2012-10-04 15:43:39,279 - INFO - tvb.core.adapters.introspector - tvb.adapters.visualizers.mplh5_fourier_spectrum will be stored new in DB
      2012-10-04 15:43:39,424 - INFO - tvb.core.adapters.introspector - tvb.adapters.visualizers.mplh5_timeseries will be stored new in DB
      2012-10-04 15:43:39,585 - INFO - tvb.core.adapters.introspector - tvb.adapters.visualizers.mplh5_topographic will be stored new in DB
      2012-10-04 15:43:39,999 - INFO - tvb.core.adapters.introspector - tvb.adapters.visualizers.mplh5_wavelet_spectrogram will be stored new in DB
      2012-10-04 15:43:40,190 - INFO - tvb.core.adapters.introspector - tvb.adapters.visualizers.parameter_space_exploration will be stored new in DB
      2012-10-04 15:43:40,363 - INFO - tvb.core.adapters.introspector - tvb.adapters.visualizers.pca will be stored new in DB
      2012-10-04 15:43:40,561 - INFO - tvb.core.adapters.introspector - tvb.adapters.visualizers.cross_correlation will be stored new in DB
      2012-10-04 15:43:40,723 - INFO - tvb.core.adapters.introspector - tvb.adapters.visualizers.cross_coherence will be stored new in DB
      2012-10-04 15:43:40,903 - INFO - tvb.core.adapters.introspector - tvb.adapters.visualizers.time_series will be stored new in DB
      2012-10-04 15:43:41,199 - INFO - tvb.core.adapters.introspector - tvb.adapters.visualizers.covariance will be stored new in DB
      2012-10-04 15:43:42,727 - ERROR - tvb.core.adapters.introspector - No group having class=MatlabAdapter stored for portlet ISOSTOPO.
      2012-10-04 15:43:42,735 - ERROR - tvb.core.adapters.introspector - No group having class=MatlabAdapter stored for portlet DBIN.
      2012-10-04 15:43:42,742 - ERROR - tvb.core.adapters.introspector - No group having class=MatlabAdapter stored for portlet CCBU.
      2012-10-04 15:43:42,750 - ERROR - tvb.core.adapters.introspector - No group having class=MatlabAdapter stored for portlet ISOS.
      2012-10-04 15:43:42,756 - ERROR - tvb.core.adapters.introspector - No group having class=MatlabAdapter stored for portlet STW.
      2012-10-04 15:43:42,762 - ERROR - tvb.core.adapters.introspector - No group having class=MatlabAdapter stored for portlet NBCB.

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            • Assignee:
              bogdan.neacsa Bogdan Neacsa
              Reporter:
              tester TVB Testing environment
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              Dates

              • Created:
                Updated:
                Resolved:

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