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  1. The Virtual Brain
  2. TVB-377

Spatio-Temporal Entities

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    Details

    • Type: Story
    • Status: Closed
    • Priority: Critical
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 0.9.7
    • Component/s: None
    • Labels:
      None

      Description

      Graphical interfaces and functionality for:
      a. Stimulation
      b. Local parameter excitability of network nodes
      c. Transmission speed manipulation (locally)

        Gliffy Diagrams

          Attachments

          1.
          Select one webGL vertex from a Cortical Surface Sub-task Closed Lia Domide

          100%

          Original Estimate - 2 weeks
          Time Spent - 1 week, 2 days, 3 hours Time Not Required
          2.
          Visualize Spatio-Temporal entities on surface as a movie (for now this means only SurfaceStimulus) Sub-task Closed Bogdan Neacsa

          100%

          Original Estimate - 3 days Original Estimate - 3 days
          Time Spent - 3 days, 4 hours
          3.
          Static Brain Visualizer based on a vector of the same length as the number of vertices. (Local Connectivity) Sub-task Closed Ionel Ortelecan

          100%

          Original Estimate - 3 days
          Time Spent - 7 hours Time Not Required
          4.
          Implement a Context around burst operations (Burst Configuration, PortletConfiguration, MonitorParameters, ....) Sub-task Closed Bogdan Neacsa  
          5.
          Define Model Parameters (on Surface and Region) Sub-task Closed Ionel Ortelecan

          100%

          Original Estimate - 1 week Original Estimate - 1 week
          Time Spent - 1 week, 4 days
          6.
          Replace current tab Simulate with Spatio-Temporal TAB Sub-task Closed Ionel Ortelecan

          100%

          Original Estimate - 1 week
          Time Spent - 3 days, 6 hours Time Not Required
          7.
          Model-Paremeters Controller and service-view layer skeleton Sub-task Closed Ionel Ortelecan

          100%

          Original Estimate - 1 week
          Time Spent - 1 day, 7 hours Time Not Required
          8.
          Inspect why the styles are not applied on the ui widgets drawn with mplh5. Sub-task Closed Ionel Ortelecan

          100%

          Original Estimate - 1 day, 4 hours
          Time Spent - 1 day, 4 hours
          9.
          BurstConfiguration-SimulationParameter attribute should support Equations inside Sub-task Closed Bogdan Neacsa

          100%

          Original Estimate - 4 hours Original Estimate - 4 hours
          Time Spent - 5 hours
          10.
          Define LocalConnectivity entities on Surface level Sub-task Closed Ionel Ortelecan

          100%

          Original Estimate - 4 days
          Time Spent - 2 days, 5 hours Time Not Required
          11.
          Define Stimulus entities on Surface/Region level Sub-task Closed Ionel Ortelecan

          100%

          Original Estimate - 1 week Original Estimate - 1 week
          Time Spent - 1 week, 2 days
          12.
          Allow the user to specify a display name for the LocalConnectivity, SurfaceStimulus and RegionStimulus entities. Sub-task Closed Ionel Ortelecan

          100%

          Original Estimate - 2 hours
          Time Spent - 2 hours
          13.
          When we configure the model parameters we should also create the Noise instance and set it on the model instance that will be passed to the phase-plane viewer. The integrator used into the simulation should also passed to the phase-plane viewer. Sub-task Closed Ionel Ortelecan

          100%

          Original Estimate - 7 hours Original Estimate - 7 hours
          Time Spent - 2 days, 1 hour
          14.
          Fix Vertices Pick View (projection-selector) Sub-task Closed Ionel Ortelecan

          100%

          Original Estimate - 6 hours Original Estimate - 6 hours
          Time Spent - 7 hours
          15.
          x-axis for the temporal equation chart should be setable Sub-task Closed Ionel Ortelecan

          100%

          Original Estimate - 7 hours
          Time Spent - 7 hours
          16.
          When loading a surface-level stimulus, the focal points are not loaded properly. Sub-task Closed Bogdan Neacsa

          100%

          Original Estimate - 1 day, 6 hours Original Estimate - 1 day, 6 hours
          Time Spent - 2 days, 1 hour
          17.
          Region-level stimulus refactor-enhancements. Sub-task Closed Ionel Ortelecan

          100%

          Original Estimate - 4 hours Original Estimate - 4 hours
          Time Spent - 1 day, 4 hours
          18.
          Equation parameters are not validated Sub-task Closed Bogdan Neacsa

          100%

          Original Estimate - 2 hours Original Estimate - 2 hours
          Time Spent - 6 hours, 30 minutes
          19.
          Enhance Region Stimulus page:- add regions selection similar to Connectivity Viewer- display nodes with weight different than 0 with a different color Sub-task Closed Ionel Ortelecan  
          20.
          Review the displayed messages Sub-task Closed Bogdan Neacsa

          100%

          Original Estimate - Not Specified Original Estimate - Not Specified
          Time Spent - 2 hours
          21.
          Reload default data for the None entry Sub-task Closed Bogdan Neacsa

          100%

          Original Estimate - Not Specified Original Estimate - Not Specified
          Time Spent - 2 hours
          22.
          Testing and fixing Sub-task Closed Ionel Ortelecan

          100%

          Original Estimate - 5 hours Original Estimate - 5 hours
          Time Spent - 1 day, 4 hours
          23.
          Make focal Points required; Filter spatial equations on surface Sub-task Closed Bogdan Neacsa

          100%

          Original Estimate - 3 hours
          Time Spent - 2 hours Time Not Required
          24.
          Local Connectivity should have multiple lines displayed on the 2D graph (most probable, worst case, best case, theoretical). We should use 2* cut-off distance, with a vertical line where the cut-off is. Sub-task Closed Bogdan Neacsa

          100%

          Original Estimate - 1 day Original Estimate - 1 day
          Time Spent - 1 day, 1 hour
          25.
          Integrate Michael's design for spatio-temporal pages. Sub-task Closed Bogdan Neacsa

          100%

          Original Estimate - 4 days Original Estimate - 4 days
          Time Spent - 4 days, 4 hours
          26.
          Model Parameters Surface. X-axis should be settable, and default should be 100 mm. Right now default is the number of nodes in the surface (totally irrelevant) Sub-task Closed Bogdan Neacsa

          100%

          Original Estimate - 4 hours Original Estimate - 4 hours
          Time Spent - 5 hours
          27.
          Block mid-point equation parameter from edit and set its default value to 0. Sub-task Closed Bogdan Neacsa

          100%

          Original Estimate - 4 hours
          Time Spent - 3 hours Time Not Required
          28.
          Decide and implement the proper way to compute the rotation angles for the focal points and brain navigator objects. Sub-task Closed Bogdan Neacsa

          100%

          Original Estimate - Not Specified Original Estimate - Not Specified
          Time Spent - 2 hours

            Activity

              People

              Assignee:
              bogdan.neacsa Bogdan Neacsa
              Reporter:
              lia.domide Lia Domide
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                Dates

                Created:
                Updated:
                Resolved:

                  Time Tracking

                  Estimated:
                  Original Estimate - 10 weeks, 4 days, 6 hours Original Estimate - 10 weeks, 4 days, 6 hours
                  10w 4d 6h
                  Remaining:
                  Remaining Estimate - 0 minutes
                  0m
                  Logged:
                  Time Spent - 13 weeks, 6 hours
                  13w 6h