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  1. The Virtual Brain
  2. TVB-3044

new SiibraCreator failure

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Details

    • Bug
    • Status: Resolved
    • Blocker
    • Resolution: Fixed
    • 2.7
    • 2.7.1
    • None
    • TVB - 2.7.1

    Description

      =================================== FAILURES ===================================
      ________________ TestSiibraBase.test_get_connectivity_component ________________
      
      self = <tvb.tests.framework.adapters.creators.siibra_base_test.TestSiibraBase object at 0x7f167fc6c0d0>
      create_test_atlases_and_parcellations = None
      
          def test_get_connectivity_component(self, create_test_atlases_and_parcellations):
              """
              Test the retrieval of structural connectivities (weights and tracts) and functional connectivities
              """
      >       weights = sb.get_connectivity_component(self.julich_parcellation, sb.Component2Modality.WEIGHTS)
      
      tvb_framework/tvb/tests/framework/adapters/creators/siibra_base_test.py:155: 
      _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
      tvb_framework/tvb/adapters/creators/siibra_base.py:263: in get_connectivity_component
          all_conns = siibra.get_features(parcellation, modality)
      ../../../.local/lib/python3.8/site-packages/siibra/features/query.py:94: in get_features
          cls._instances[querytype, args_hash] = querytype(**kwargs)
      ../../../.local/lib/python3.8/site-packages/siibra/features/connectivity.py:333: in __init__
          HcpConnectivityFetcher.__init__(self, filename_keyword="Counts")
      ../../../.local/lib/python3.8/site-packages/siibra/features/connectivity.py:205: in __init__
          self._connector = EbrainsPublicDatasetConnector(
      _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
      
      self = <siibra.retrieval.repositories.EbrainsPublicDatasetConnector object at 0x7f1678d7f7c0>
      dataset_id = '0f1ccc4a-9a11-4697-b43f-9c9c8ac543e6', in_progress = False
      
          def __init__(self, dataset_id, in_progress=False):
              """Construct a dataset query with the dataset id.
          
              Parameters
              ----------
              dataset_id : str
                  EBRAINS dataset id of a public dataset in KG v3.
              in_progress: bool (default:False)
                  If true, will request datasets that are still under curation.
                  Will only work when autenticated with an appropriately privileged
                  user account.
              """
              self.dataset_id = dataset_id
              stage = "IN_PROGRESS" if in_progress else "RELEASED"
              url = f"{self.base_url}/{self.QUERY_ID}/instances?stage={stage}&dataset_id={dataset_id}"
              result = EbrainsRequest(url, DECODERS[".json"]).get()
              self.versions = {}
              self._description = ""
              self._name = ""
              self.use_version = None
      >       assert len(result["data"]) < 2
      E       AssertionError
      
      ../../../.local/lib/python3.8/site-packages/siibra/retrieval/repositories.py:313: AssertionError
      

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              romina.baila Romina Baila
              lia.domide Lia Domide
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                Updated:
                Resolved:

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