Description
2022-11-04 10:31:27,454 - WARNING [proc:98884] - siibra - This is a development release. Use at your own risk. 2022-11-04 10:31:27,454 - INFO [proc:98884] - siibra - Please file bugs and issues at https://github.com/FZJ-INM1-BDA/siibra-python. 2022-11-04 10:31:28,514 - INFO [proc:98884] - tvb.adapters.creators.siibra_base - Using atlas Allen Mouse Common Coordinate Framework v3 and parcellation Allen Mouse Common Coordinate Framework v3 2017 2022-11-04 10:31:28,514 - INFO [proc:98884] - siibra - Found 2 versions for dataset 'Parcellation-based structural and resting-state functional brain connectomes of a healthy cohort' (v1.0, v1.1). Will use v1.1 per default. 2022-11-04 10:31:34,374 - ERROR [proc:98884] - tvb.adapters.creators.siibra_base - No connectivity Component2Modality.WEIGHTS were found in parcellation Allen Mouse Common Coordinate Framework v3 2017! 2022-11-04 10:31:34,375 - INFO [proc:98884] - siibra - Found 2 versions for dataset 'Parcellation-based structural and resting-state functional brain connectomes of a healthy cohort' (v1.0, v1.1). Will use v1.1 per default. 2022-11-04 10:31:34,873 - ERROR [proc:98884] - tvb.adapters.creators.siibra_base - No connectivity Component2Modality.TRACTS were found in parcellation Allen Mouse Common Coordinate Framework v3 2017! 2022-11-04 10:31:34,873 - ERROR [proc:98884] - tvb.adapters.creators.siibra_base - Could not find both weights and tract lengths from parcellation Allen Mouse Common Coordinate Framework v3 2017, so a connectivity cannot be computed 2022-11-04 10:31:34,873 - INFO [proc:98884] - tvb.adapters.creators.siibra_base - Using atlas Allen Mouse Common Coordinate Framework v3 and parcellation Allen Mouse Common Coordinate Framework v3 2017 2022-11-04 10:31:34,873 - INFO [proc:98884] - siibra - Found 2 versions for dataset 'Parcellation-based structural and resting-state functional brain connectomes of a healthy cohort' (v1.0, v1.1). Will use v1.1 per default. 2022-11-04 10:31:35,379 - ERROR [proc:98884] - tvb.adapters.creators.siibra_base - No connectivity Component2Modality.FC were found in parcellation Allen Mouse Common Coordinate Framework v3 2017! 2022-11-04 10:31:35,379 - ERROR [proc:98884] - tvb.adapters.creators.siibra_base - Could not find any functional connectivity in parcellation Allen Mouse Common Coordinate Framework v3 2017, so a TVB Functional Connectivity cannot be computed 2022-11-04 10:31:35,379 - ERROR [proc:98884] - tvb.core.services.operation_service - Could not launch Operation with the given input data! Traceback (most recent call last): File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/services/operation_service.py", line 243, in initiate_prelaunch result_msg, nr_datatypes = adapter_instance._prelaunch(operation, view_model, available_space) File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/adapters/abcadapter.py", line 90, in new_function return func(*args, **kw) File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/adapters/abcadapter.py", line 353, in _prelaunch result = self.launch(view_model) File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/adapters/creators/siibra_creator.py", line 190, in launch for subject_id, conn in conn_dict.items(): AttributeError: 'NoneType' object has no attribute 'items' 2022-11-04 10:31:35,408 - ERROR [proc:98884] - tvb.core.operation_async_launcher - Could not execute operation 15 2022-11-04 10:31:35,408 - ERROR [proc:98884] - tvb.core.operation_async_launcher - 'NoneType' object has no attribute 'items' Traceback (most recent call last): File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/operation_async_launcher.py", line 79, in do_operation_launch OperationService().initiate_prelaunch(curent_operation, adapter_instance) File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/services/operation_service.py", line 262, in initiate_prelaunch self._handle_exception(excep1, temp_files, msg, operation) File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/services/operation_service.py", line 319, in _handle_exception raise exception.with_traceback( File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/services/operation_service.py", line 243, in initiate_prelaunch result_msg, nr_datatypes = adapter_instance._prelaunch(operation, view_model, available_space) File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/adapters/abcadapter.py", line 90, in new_function return func(*args, **kw) File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/adapters/abcadapter.py", line 353, in _prelaunch result = self.launch(view_model) File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/adapters/creators/siibra_creator.py", line 190, in launch for subject_id, conn in conn_dict.items(): AttributeError: 'NoneType' object has no attribute 'items' 2022-11-04 10:32:22,358 - INFO [proc:98979] - siibra - Version: 0.3a27 2022-11-04 10:32:22,358 - WARNING [proc:98979] - siibra - This is a development release. Use at your own risk. 2022-11-04 10:32:22,358 - INFO [proc:98979] - siibra - Please file bugs and issues at https://github.com/FZJ-INM1-BDA/siibra-python. 2022-11-04 10:32:23,260 - INFO [proc:98979] - tvb.adapters.creators.siibra_base - Using atlas Allen Mouse Common Coordinate Framework v3 and parcellation Allen Mouse Common Coordinate Framework v3 2017 2022-11-04 10:32:23,260 - INFO [proc:98979] - siibra - Found 2 versions for dataset 'Parcellation-based structural and resting-state functional brain connectomes of a healthy cohort' (v1.0, v1.1). Will use v1.1 per default. 2022-11-04 10:32:25,982 - ERROR [proc:98979] - tvb.adapters.creators.siibra_base - No connectivity Component2Modality.WEIGHTS were found in parcellation Allen Mouse Common Coordinate Framework v3 2017! 2022-11-04 10:32:25,982 - INFO [proc:98979] - siibra - Found 2 versions for dataset 'Parcellation-based structural and resting-state functional brain connectomes of a healthy cohort' (v1.0, v1.1). Will use v1.1 per default. 2022-11-04 10:32:26,912 - ERROR [proc:98979] - tvb.adapters.creators.siibra_base - No connectivity Component2Modality.TRACTS were found in parcellation Allen Mouse Common Coordinate Framework v3 2017! 2022-11-04 10:32:26,913 - ERROR [proc:98979] - tvb.adapters.creators.siibra_base - Could not find both weights and tract lengths from parcellation Allen Mouse Common Coordinate Framework v3 2017, so a connectivity cannot be computed 2022-11-04 10:32:26,913 - INFO [proc:98979] - tvb.adapters.creators.siibra_base - Using atlas Allen Mouse Common Coordinate Framework v3 and parcellation Allen Mouse Common Coordinate Framework v3 2017 2022-11-04 10:32:26,913 - INFO [proc:98979] - siibra - Found 2 versions for dataset 'Parcellation-based structural and resting-state functional brain connectomes of a healthy cohort' (v1.0, v1.1). Will use v1.1 per default. 2022-11-04 10:32:27,517 - ERROR [proc:98979] - tvb.adapters.creators.siibra_base - No connectivity Component2Modality.FC were found in parcellation Allen Mouse Common Coordinate Framework v3 2017! 2022-11-04 10:32:27,517 - ERROR [proc:98979] - tvb.adapters.creators.siibra_base - Could not find any functional connectivity in parcellation Allen Mouse Common Coordinate Framework v3 2017, so a TVB Functional Connectivity cannot be computed 2022-11-04 10:32:27,517 - ERROR [proc:98979] - tvb.core.services.operation_service - Could not launch Operation with the given input data! Traceback (most recent call last): File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/services/operation_service.py", line 243, in initiate_prelaunch result_msg, nr_datatypes = adapter_instance._prelaunch(operation, view_model, available_space) File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/adapters/abcadapter.py", line 90, in new_function return func(*args, **kw) File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/adapters/abcadapter.py", line 353, in _prelaunch result = self.launch(view_model) File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/adapters/creators/siibra_creator.py", line 190, in launch for subject_id, conn in conn_dict.items(): AttributeError: 'NoneType' object has no attribute 'items' 2022-11-04 10:32:27,545 - ERROR [proc:98979] - tvb.core.operation_async_launcher - Could not execute operation 16 2022-11-04 10:32:27,545 - ERROR [proc:98979] - tvb.core.operation_async_launcher - 'NoneType' object has no attribute 'items' Traceback (most recent call last): File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/operation_async_launcher.py", line 79, in do_operation_launch OperationService().initiate_prelaunch(curent_operation, adapter_instance) File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/services/operation_service.py", line 262, in initiate_prelaunch self._handle_exception(excep1, temp_files, msg, operation) File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/services/operation_service.py", line 319, in _handle_exception raise exception.with_traceback( File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/services/operation_service.py", line 243, in initiate_prelaunch result_msg, nr_datatypes = adapter_instance._prelaunch(operation, view_model, available_space) File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/adapters/abcadapter.py", line 90, in new_function return func(*args, **kw) File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/core/adapters/abcadapter.py", line 353, in _prelaunch result = self.launch(view_model) File "/Users/lia.domide/WORK/TVB/root-git/tvb-root/tvb_framework/tvb/adapters/creators/siibra_creator.py", line 190, in launch for subject_id, conn in conn_dict.items(): AttributeError: 'NoneType' object has no attribute 'items'
In web GUI, we get the AttributeError message 'NoneType' object has no attribute 'items', and at least we should get the custom message: "No connectivity found..."
Also, if no other atlas then the default has compatible data, maybe we shouldn't show all options