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  1. The Virtual Brain
  2. TVB-2980 TVB-KG integration
  3. TVB-3020

siibra integration: analysis and API proposal

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    • Sub-task
    • Status: Resolved
    • Major
    • Resolution: Fixed
    • None
    • 2.7
    • None
    • VBC Sprint 14

    Description

      We have some resources here:

      https://github.com/FZJ-INM1-BDA/siibra-explorer

      https://siibra-python.readthedocs.io/en/latest/

      https://github.com/FZJ-INM1-BDA/siibra-tutorials/blob/main/05-CombinedWorkflow.ipynb

      https://github.com/dickscheid/siibra-tutorials/pull/1 

      Also few links in the description & comments of the parent task TVB-2980.

      Steps would be:

      • scan through these links to understand the context
      • continue the analysis on this task by proposing how we can query EBRAINS KG through siibra API to retrieve a Connectivity Measure DT into TVB (having a Connectivity from TVB as limit also - the atlas/regions in it are important)
      • based on the analysis - propose an API/GUI specific to TVB for this CM extraction from KG

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              romina.baila Romina Baila
              lia.domide Lia Domide
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