Details
Description
The purpose of this task is to define and implement possible ways to integrate the biological information into TVB in a way that would allow us to inform model parameters.
Charite group has defined the TVB-O ontology and linked it to MeSH ontology on web-protege. These ontologies should be accessible via KG soon, and it will be the starting point towards integration the bio data into TVB.
Integration with siibra is mostly desired, as that can give us TVB compatibility in terms of parcellation and flexible queries, on top of multiple datasets.
Gliffy Diagrams
Attachments
1.
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siibra integration: analysis and API proposal |
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Resolved | Romina Baila |
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2.
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Finalize "Apply Spatial Vector" page |
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Resolved | David Bacter |
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3.
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Add siibra-creator in TVB web GUI |
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Resolved | Romina Baila |
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4.
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Add configuration for EBRAINS authentication token in tvb-web framework |
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Resolved | Romina Baila |
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5.
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Update documentation for command line usage of siibra in TVB |
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Resolved | Romina Baila |
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