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  1. The Virtual Brain
  2. TVB-2927

Cannot visualize TimeSeriesSurface with BOLD ROI monitor

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    Details

    • Type: Bug
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 2.4
    • Component/s: None
    • Labels:
    • Epic Link:
    • Sprint:
      VBC Sprint 13
    • TVB-C Task:
      8.2 Pipeline Integration

      Description

      Steps to reproduce: setup a surface simulation and a BOLD ROI monitor for it. The resulted time series have 2 dimensions, while our viewers expect 4. This was a problem in TVB 1.5.8 as well.

      2021-05-13 08:14:41,887 - ERROR - tvb.interface.web.controllers.decorators - An unexpected exception appeared
      Traceback (most recent call last):
        File "/WORK/TVB_GIT/tvb-root/framework_tvb/tvb/interfaces/web/controllers/decorators.py", line 153, in deco
          return func(*a, **b)
        File "/WORK/TVB_GIT/tvb-root/framework_tvb/tvb/interfaces/web/controllers/decorators.py", line 81, in deco
          template_dict = func(*a, **b)
        File "/WORK/TVB_GIT/tvb-root/framework_tvb/tvb/interfaces/web/controllers/decorators.py", line 200, in deco
          return func(*a, **b)
        File "/WORK/TVB_GIT/tvb-root/framework_tvb/tvb/interfaces/web/controllers/decorators.py", line 272, in deco
          return func(*a, **b)
        File "/WORK/TVB_GIT/tvb-root/framework_tvb/tvb/interfaces/web/controllers/decorators.py", line 257, in deco
          return func(*a, **b)
        File "/WORK/TVB_GIT/tvb-root/framework_tvb/tvb/interfaces/web/controllers/flow_controller.py", line 228, in default
          template_specification = self.execute_post(project.id, submit_link, step_key, algorithm, **data)
        File "/WORK/TVB_GIT/tvb-root/framework_tvb/tvb/interfaces/web/controllers/flow_controller.py", line 305, in execute_post
          result = adapter_instance.launch(view_model)
        File "/WORK/TVB_GIT/tvb-root/framework_tvb/tvb/adapters/visualizers/brain.py", line 168, in launch
          params = self.compute_parameters(time_series_index, shell_surface_index)
        File "/WORK/TVB_GIT/tvb-root/framework_tvb/tvb/adapters/visualizers/brain.py", line 267, in compute_parameters
          labelsModes=list(range(time_series.data_length_4d)), extended_view=False,
      TypeError: 'NoneType' object cannot be interpreted as an integer
      

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                Assignee:
                robert.vincze Robert Francisc Vincze
                Reporter:
                paula.popa Paula Popa
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                  Dates

                  Created:
                  Updated:
                  Resolved:

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