Details
Major Description
Found some problems when testing the WINDOWS DISTRIBUTION related to more complicated simulations (copy of a branch of a copy of a simulation) and attached two zip simulations for them. The first one seems to be related to the Bold monitor in library and the error says:
Traceback (most recent call last): File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\services\operation_service.py", line 306, in initiate_prelaunch result_msg, nr_datatypes = adapter_instance._prelaunch(operation, view_model, unique_id, available_space) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\adapters\abcadapter.py", line 91, in new_function return func(*args, **kw) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\adapters\abcadapter.py", line 362, in _prelaunch result = self.launch(view_model) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\adapters\simulator\simulator_adapter.py", line 314, in launch for result in self.algorithm(simulation_length=self.algorithm.simulation_length): File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\simulator.py", line 412, in _call_ output = self._loop_monitor_output(step, state, node_coupling) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\simulator.py", line 357, in _loop_monitor_output for monitor in self.monitors] File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\simulator.py", line 357, in <listcomp> for monitor in self.monitors] File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\monitors.py", line 131, in record return self.sample(step, observed) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\monitors.py", line 944, in sample self._stock[((step//self._interim_istep % self._stock_steps) - 1), :] = avg_interim_stock TypeError: 'NoneType' object does not support item assignment 2020-12-23 10:37:26,973 - DEBUG [proc:14492] - tvb.core.entities.storage.root_dao - We will store entity of type: Operation with id 31 2020-12-23 10:37:26,976 - DEBUG [proc:14492] - tvb.core.entities.storage.root_dao - After commit Operation ID is 31 2020-12-23 10:37:26,990 - DEBUG [proc:14492] - tvb.core.entities.storage.root_dao - We will store entity of type: BurstConfiguration with id 57 2020-12-23 10:37:26,998 - DEBUG [proc:14492] - tvb.core.entities.storage.root_dao - After commit BurstConfiguration ID is 57 2020-12-23 10:37:27,037 - ERROR [proc:14492] - tvb.core.operation_async_launcher - Could not execute operation 31 2020-12-23 10:37:27,037 - ERROR [proc:14492] - tvb.core.operation_async_launcher - 'NoneType' object does not support item assignment Traceback (most recent call last): File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\operation_async_launcher.py", line 78, in do_operation_launch OperationService().initiate_prelaunch(curent_operation, adapter_instance) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\services\operation_service.py", line 326, in initiate_prelaunch self._handle_exception(excep1, temp_files, msg, operation) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\services\operation_service.py", line 382, in _handle_exception sys.exc_info()[2]) # when rethrowing in python this is required to preserve the stack trace File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\services\operation_service.py", line 306, in initiate_prelaunch result_msg, nr_datatypes = adapter_instance._prelaunch(operation, view_model, unique_id, available_space) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\adapters\abcadapter.py", line 91, in new_function return func(*args, **kw) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\adapters\abcadapter.py", line 362, in _prelaunch result = self.launch(view_model) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\adapters\simulator\simulator_adapter.py", line 314, in launch for result in self.algorithm(simulation_length=self.algorithm.simulation_length): File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\simulator.py", line 412, in _call_ output = self._loop_monitor_output(step, state, node_coupling) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\simulator.py", line 357, in _loop_monitor_output for monitor in self.monitors] File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\simulator.py", line 357, in <listcomp> for monitor in self.monitors] File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\monitors.py", line 131, in record return self.sample(step, observed) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\monitors.py", line 944, in sample self._stock[((step//self._interim_istep % self._stock_steps) - 1), :] = avg_interim_stock TypeError: 'NoneType' object does not support item assignment The second one seems to be about the new infinite_theta models: Traceback (most recent call last): File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\services\operation_service.py", line 306, in initiate_prelaunch result_msg, nr_datatypes = adapter_instance._prelaunch(operation, view_model, unique_id, available_space) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\adapters\abcadapter.py", line 91, in new_function return func(*args, **kw) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\adapters\abcadapter.py", line 362, in _prelaunch result = self.launch(view_model) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\adapters\simulator\simulator_adapter.py", line 314, in launch for result in self.algorithm(simulation_length=self.algorithm.simulation_length): File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\simulator.py", line 409, in __call__ state = self.integrate_next_step(state, self.model, node_coupling, local_coupling, stimulus) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\integrators.py", line 169, in integrate X[model.state_variables_mask] = self.scheme(X, model.dfun, coupling, local_coupling, stimulus) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\integrators.py", line 513, in scheme X_next = self._apply_ode(X, dfun, coupling, local_coupling, stimulus) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\integrators.py", line 493, in _apply_ode return self._ode.integrate(self._ode.t + self.dt).reshape(X.shape) + self.dt * stimulus File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\scipy\integrate\_ode.py", line 435, in integrate self.f_params, self.jac_params) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\scipy\integrate\_ode.py", line 1175, in run tuple(self.call_args) + (f_params,))) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\integrators.py", line 474, in wrapper dXdt = dfun(X, coupling, local_coupling) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\models\infinite_theta.py", line 282, in dfun r, V, g, q = state_variables ValueError: not enough values to unpack (expected 4, got 2) 2020-12-23 11:10:32,472 - DEBUG [proc:10772] - tvb.core.entities.storage.root_dao - We will store entity of type: Operation with id 49 2020-12-23 11:10:32,475 - DEBUG [proc:10772] - tvb.core.entities.storage.root_dao - After commit Operation ID is 49 2020-12-23 11:10:32,486 - DEBUG [proc:10772] - tvb.core.entities.storage.root_dao - We will store entity of type: BurstConfiguration with id 96 2020-12-23 11:10:32,492 - DEBUG [proc:10772] - tvb.core.entities.storage.root_dao - After commit BurstConfiguration ID is 96 2020-12-23 11:10:32,526 - ERROR [proc:10772] - tvb.core.operation_async_launcher - Could not execute operation 49 2020-12-23 11:10:32,526 - ERROR [proc:10772] - tvb.core.operation_async_launcher - not enough values to unpack (expected 4, got 2) Traceback (most recent call last): File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\operation_async_launcher.py", line 78, in do_operation_launch OperationService().initiate_prelaunch(curent_operation, adapter_instance) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\services\operation_service.py", line 326, in initiate_prelaunch self._handle_exception(excep1, temp_files, msg, operation) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\services\operation_service.py", line 382, in _handle_exception sys.exc_info()[2]) # when rethrowing in python this is required to preserve the stack trace File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\services\operation_service.py", line 306, in initiate_prelaunch result_msg, nr_datatypes = adapter_instance._prelaunch(operation, view_model, unique_id, available_space) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\adapters\abcadapter.py", line 91, in new_function return func(*args, **kw) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\core\adapters\abcadapter.py", line 362, in _prelaunch result = self.launch(view_model) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\adapters\simulator\simulator_adapter.py", line 314, in launch for result in self.algorithm(simulation_length=self.algorithm.simulation_length): File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\simulator.py", line 409, in __call__ state = self.integrate_next_step(state, self.model, node_coupling, local_coupling, stimulus) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\integrators.py", line 169, in integrate X[model.state_variables_mask] = self.scheme(X, model.dfun, coupling, local_coupling, stimulus) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\integrators.py", line 513, in scheme X_next = self._apply_ode(X, dfun, coupling, local_coupling, stimulus) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\integrators.py", line 493, in _apply_ode return self._ode.integrate(self._ode.t + self.dt).reshape(X.shape) + self.dt * stimulus File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\scipy\integrate\_ode.py", line 435, in integrate self.f_params, self.jac_params) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\scipy\integrate\_ode.py", line 1175, in run tuple(self.call_args) + (f_params,))) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\integrators.py", line 474, in wrapper dXdt = dfun(X, coupling, local_coupling) File "C:\Users\Robert.Vincze\Downloads\TVB_Windows_2.1a1\TVB_Distribution\tvb_data\Lib\site-packages\tvb\simulator\models\infinite_theta.py", line 282, in dfun r, V, g, q = state_variables ValueError: not enough values to unpack (expected 4, got 2)
