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  1. The Virtual Brain
  2. TVB-2411

Upgrade for allenSDK 0.16

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    Details

    • Type: Task
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.5.6
    • Component/s: None
    • Labels:
      None
    • Epic Link:
    • Sprint:
      1.5.6
    • TVB-C Task:
      8.2 Pipeline Integration

      Description

      Dear all,

      I am writing you since I noticed that the allen connectivity builder on tvb does not work.

      this is because the allen sdk has been update (allensdk 0.16), and the current version of the allensdk that is on tvb (allensdk 0.12) is not compatible with the new organization of their database.

      with the allensdk 0.16 the allen connectivity builder code should read as the file that is attached in this email. (it works in my computer where i have the allensdk update).

      In particular i am writing to you since I would like to find a easy solution for fixing the problem (or being prepared to explain how to fix it) in view of the tvb node.

      I try to just replace the allensdk package 0.12 (.../tvb_data/lib/python2.7/site-packages ) with the new version 0.16, but it does not work (from the GUI version it disappear the possibility to lunch the allen connectivity builder)...

      do you have any ideas on how we can easy way to get around the problem?
      Thanks,

      Cheers,
      francesca

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              Assignee:
              lia.domide Lia Domide
              Reporter:
              francesca.melozzi Francesca Melozzi
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