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  1. The Virtual Brain
  2. TVB-1944

Tutorial_Evoked_Responses_In_The_Visual_Cortex is incorrect

    Details

    • Type: Bug
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: 1.5
    • Component/s: None
    • Labels:
      None

      Description

      Reported on Google group by Toygun Ba┼čaklar:

      Hi everyone,

      So I'm new to TVB and dealing with the evoked responses in the visual cortex. So I found this tutorial (https://github.com/the-virtual-brain/tvb-documentation/blob/master/tutorials/Tutorial_Evoked_Responses_In_The_Visual_Cortex.ipynb) and tried to observe the outcome of this. I tried it in both scripting interface and the web based GUI. I did what exactly the tutorial says but after this line,

      rec = (monitors.TemporalAverage(period=1e3 / 2048.), monitors.EEG(projection_matrix_data = pr, period=1e3/2048.))
      

      I get this error:

      Traceback (most recent call last):
        File "<pyshell#8>", line 1, in <module>
          rec = (monitors.TemporalAverage(period=1e3 / 2048.), monitors.EEG(projection_matrix_data = pr, period=1e3/2048.))
      NameError: name 'pr' is not defined
      

      But "pr" is defined in the above code like this

      root_path = os.path.dirname(simulator.__file__)
      proj_mat_path = os.path.join(root_path,'files', "connectivity","o52r00_irp2008", "projection_eeg_1020_62.mat")
      matlab_data = io.matlab.loadmat(proj_mat_path)
      eeg_projection = matlab_data["ProjectionMatrix"]
          
      pr = projections.ProjectionRegionEEG()
      pr.projection_data = eeg_projection
      

      I can't solve the problem. Can you help me ?

      Also when I tried to apply this tutorial on web based GUI, It also gives me an error like this:

      'Discrete equation' has no attribute '_pattern'

      And I read all the manuals for the web based GUI, I believe I did not do nothing wrong. Although when I select the "Spatiotemporal stimulus" as "None", It gives me default EEG signals.

      Thanks in advance

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              • Assignee:
                lia.domide Lia Domide
                Reporter:
                tester TVB Testing environment
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