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  1. The Virtual Brain
  2. TVB-1759 Make the Pipeline accessible
  3. TVB-1768

Prepare VM with the pipeline related software

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    Details

    • Type: Sub-task
    • Status: Closed
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:
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      Description

      I have started with: 192.168.123.232 Debian 7, on Codemart server

      FreeSurfer requirements:
      http://surfer.nmr.mgh.harvard.edu/fswiki/SystemRequirements

      Debian mounting a new drive:
      http://www.debiantutorials.com/how-to-add-a-new-hard-disk-or-partition-using-uuid-and-ext4-filesystem/

      Matlab Runtime:
      http://www.mathworks.com/products/compiler/mcr/
      sh install -mode silent -agreeToLicense yes

      python
      apt-get install python python-numpy python-matplotlib

      FSL:
      wget O http://neuro.debian.net/lists/wheezy.de-m.full | sudo tee /etc/apt/sources.list.d/neurodebian.sources.list
      apt-key adv --recv-keys --keyserver hkp://pgp.mit.edu:80 0xA5D32F012649A5A9
      sudo apt-get update
      apt-get install fsl-complete

      GCC 4.9 (from jessie repo):
      https://solarianprogrammer.com/2015/01/13/raspberry-pi-raspbian-install-gcc-compile-cpp-14-programs/

      Tim's installation steps are greatly enumerated:
      https://github.com/timpx/scripts/wiki/Installation-Steps

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              Assignee:
              lia.domide Lia Domide
              Reporter:
              viktor.jirsa Dr. Viktor Jirsa
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                Updated:
                Resolved:

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