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  1. The Virtual Brain
  2. TVB-1762

TVB data sharing with other tools

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    Details

    • Type: Epic
    • Status: Resolved
    • Priority: Major
    • Resolution: Fixed
    • Affects Version/s: None
    • Fix Version/s: None
    • Component/s: None
    • Labels:
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    • Epic Name:
      Collaboration Exterior

      Description

      To on the list of tools we want to interface with:

      • HBP
      • Allen Institute
      • Open Source Brain
      • Brainstorm ( Francois Tadel)
      • FreeSurfer
      • FSL
      • SPM

      Open questions:

      • what is the use-case we mainly want to cover with these export/import or data/algorithms ?
      • what license restrictions we have ?
      • what benefits we get from interfacing with others, apart from publicity/visibility of TVB ?

      Scenarion for Brainstorm:

      • take T1 scans of the patient, treat them with Brainstorm, align anatomy, produce TVB compatible dataset
      • export patient model (structural data) from Brainstorm
      • import it into TVB
      • keep the dataset in Brainstorm
      • run simulations in TVB, and export the results (e.g. EEG TS) into a compatible format with Brainstorm
      • important for EEG TS (have a supplementary channel with the stimulus signal)

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              Assignee:
              Unassigned Unassigned
              Reporter:
              lia.domide Lia Domide
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