Details
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Type:
Sub-task
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Status: Closed
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Priority:
Blocker
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Resolution: Fixed
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Affects Version/s: 1.2, 1.2.1
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Fix Version/s: 1.2.2
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Component/s: TVB Framework
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Sprint:Post-1.2.1
Description
After today's dicsussion with Mihai we realised that the Local Connectivity creator might not be giving the correct matrix, that is, is yieldining only the geodesic distance matrix.
Paula:
In surfaces_scientific.py --> CortexScientific – compute_local_connectivity
Line 704
self.local_connectivity.compute() # Evaluate equation based distance
This line computes the spatial profile of the local connectivity, and in principle should replace the geodesic distance matrix, with a new one.
Hower after having a look at the local connectivity creator.
It is only computing the geodesic distance via the compute+sparse matrix method.
Because of the checks that exist in the "configure" method in CortexScientific, the method "compute_local_connectivity" is never reached...